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1

De novo reconstruction of gene regulatory networks from time series data, an approach based on formal methods

Ceccarelli, Michele, Cerulo, Luigi, Santone, Antonella

Journal:

Year:

2014

Language:

english

File:

PDF, 676 KB

english, 2014

2

A review of COVID-19 biomarkers and drug targets: resources and tools

Caruso, Francesca P, Scala, Giovanni, Cerulo, Luigi, Ceccarelli, Michele

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 946 KB

2020

3

How changes affect software entropy: an empirical study

Canfora, Gerardo, Cerulo, Luigi, Cimitile, Marta, Di Penta, Massimiliano

Journal:

Empirical Software Engineering

Year:

2014

Language:

english

File:

PDF, 1.42 MB

english, 2014

4

The life and death of statically detected vulnerabilities: An empirical study

Massimiliano Di Penta, Luigi Cerulo, Lerina Aversano

Journal:

Information and Software Technology

Year:

2009

Language:

english

File:

PDF, 532 KB

english, 2009

5

Determination of cylindrospermopsin in freshwaters and fish tissue by liquid chromatography coupled to electrospray ion trap mass spectrometry

Pasquale Gallo, Serena Fabbrocino, Maria Grazia Cerulo, Pasquale Ferranti, Milena Bruno, Luigi Serpe

Journal:

Rapid Communications in Mass Spectrometry

Year:

2009

Language:

english

File:

PDF, 211 KB

english, 2009

6

An empirical study on the maintenance of source code clones

Suresh Thummalapenta, Luigi Cerulo, Lerina Aversano, Massimiliano Di Penta

Journal:

Empirical Software Engineering

Year:

2010

Language:

english

File:

PDF, 954 KB

english, 2010

7

Learning gene regulatory networks from only positive and unlabeled data

Luigi Cerulo, Charles Elkan, Michele Ceccarelli

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

8

A negative selection heuristic to predict new transcriptional targets

Luigi Cerulo, Vincenzo Paduano, Pietro Zoppoli, Michele Ceccarelli

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

9

Serotonin activates cell survival and apoptotic death responses in cultured epithelial thyroid cells

Cerulo, Giuliana, Tafuri, Simona, De Pasquale, Valeria, Rea, Silviana, Romano, Simona, Costagliola, Anna, Della Morte, Rossella, Avallone, Luigi, Pavone, Luigi Michele

Journal:

Year:

2014

Language:

english

File:

PDF, 684 KB

english, 2014

10

[IEEE 2008 10th International Symposium on Web Site Evolution (WSE) - Beijing (2008.10.3-2008.10.4)] 2008 10th International Symposium on Web Site Evolution - Mining candidate web services from legacy code

Aversano, Lerina, Cerulo, Luigi, Palumbo, Ciro

Year:

2008

Language:

english

File:

PDF, 313 KB

english, 2008

11

[IEEE 2011 18th Working Conference on Reverse Engineering (WCRE) - Limerick, Ireland (2011.10.17-2011.10.20)] 2011 18th Working Conference on Reverse Engineering - How Long Does a Bug Survive? An Empirical Study

Canfora, Gerardo, Ceccarelli, Michele, Cerulo, Luigi, Di Penta, Massimiliano

Year:

2011

Language:

english

File:

PDF, 355 KB

english, 2011

12

[IEEE 2013 IEEE 13th International Working Conference on Source Code Analysis and Manipulation (SCAM) - Eindhoven, Netherlands (2013.09.22-2013.09.23)] 2013 IEEE 13th International Working Conference on Source Code Analysis and Manipulation (SCAM) - A Hidden Markov Model to detect coded information islands in free text

Cerulo, Luigi, Ceccarelli, Michele, Di Penta, Massimiliano, Canfora, Gerardo

Year:

2013

Language:

english

File:

PDF, 302 KB

english, 2013

13

[IEEE 2008 IEEE International Conference on Software Maintenance (ICSM) - Beijing, China (2008.09.28-2008.10.4)] 2008 IEEE International Conference on Software Maintenance - An empirical study of the relationships between design pattern roles and class change proneness

Di Penta, Massimiliano, Cerulo, Luigi, Gueheneuc, Yann-Gael, Antoniol, Giuliano

Year:

2008

Language:

english

File:

PDF, 338 KB

english, 2008

14

[IEEE 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop, BIBMW - Washington, DC, USA (2009.11.1-2009.11.4)] 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop - Selection of negative examples in learning gene regulatory networks

Ceccarelli, Michele, Cerulo, Luigi

Year:

2009

Language:

english

File:

PDF, 175 KB

english, 2009

15

[IEEE 2006 13th Working Conference on Reverse Engineering - Benevento, Italy (2006.10.23-2006.10.27)] 2006 13th Working Conference on Reverse Engineering - On the Use of Process Trails to Understand Software Development

Year:

2006

Language:

english

File:

PDF, 70 KB

english, 2006

16

[IEEE 2010 IEEE 18th International Conference on Program Comprehension (ICPC) - Braga, Portugal (2010.06.30-2010.07.2)] 2010 IEEE 18th International Conference on Program Comprehension - An Exploratory Study of Factors Influencing Change Entropy

Canfora, Gerardo, Cerulo, Luigi, Di Penta, Massimiliano, Pacilio, Francesco

Year:

2010

Language:

english

File:

PDF, 380 KB

english, 2010

17

[IEEE 2010 IEEE 26th International Conference on Software Maintenance (ICSM) - Timi oara, Romania (2010.09.12-2010.09.18)] 2010 IEEE International Conference on Software Maintenance - Using multivariate time series and association rules to detect logical change coupling: An empirical study

Canfora, Gerardo, Ceccarelli, Michele, Cerulo, Luigi, Di Penta, Massimiliano

Year:

2010

Language:

english

File:

PDF, 957 KB

english, 2010

18

[IEEE Seventh IEEE International Working Conference on Source Code Analysis and Manipulation (SCAM 2007) - Paris, France (2007.09.30-2007.10.1)] Seventh IEEE International Working Conference on Source Code Analysis and Manipulation (SCAM 2007) - Relating the Evolution of Design Patterns and Crosscutting Concerns

Aversano, Lerina, Cerulo, Luigi, Penta, Massimiliano Di

Year:

2007

Language:

english

File:

PDF, 447 KB

english, 2007

19

[IEEE 2006 22nd IEEE International Conference on Software Maintenance - Philadelphia, PA, USA (2006.9.24-2006.9.24)] 2006 22nd IEEE International Conference on Software Maintenance - On the Use of Line Co-change for Identifying Crosscutting Concern Code

Canfora, Gerardo, Cerulo, Luigi, Penta, Massimiliano

Year:

2006

Language:

english

File:

PDF, 356 KB

english, 2006

20

[IEEE Fourth International Workshop on Mining Software Repositories - Minneapolis, MN, USA (2007.05.20-2007.05.26)] Fourth International Workshop on Mining Software Repositories (MSR'07:ICSE Workshops 2007) - Identifying Changed Source Code Lines from Version Repositories

Canfora, Gerardo, Cerulo, Luigi, Penta, Massimiliano Di

Year:

2007

Language:

english

File:

PDF, 428 KB

english, 2007

21

[IEEE 2008 Eighth IEEE International Working Conference on Source Code Analysis and Manipulation (SCAM 2008) - Beijing (2008.09.28-2008.09.29)] 2008 Eighth IEEE International Working Conference on Source Code Analysis and Manipulation - The Evolution and Decay of Statically Detected Source Code Vulnerabilities

Penta, Massimiliano Di, Cerulo, Luigi, Aversano, Lerina

Year:

2008

Language:

english

File:

PDF, 441 KB

english, 2008

22

Characterisation of biotoxins produced by a cyanobacteria bloom in Lake Averno using two LC–MS-based techniques

Ferranti, Pasquale, Fabbrocino, Serena, Cerulo, Maria Grazia, Bruno, Milena, Serpe, Luigi, Gallo, Pasquale

Journal:

Food Additives & Contaminants Part A

Year:

2008

Language:

english

File:

PDF, 1.48 MB

english, 2008

23

[IEEE 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shanghai, China (2013.12.18-2013.12.21)] 2013 IEEE International Conference on Bioinformatics and Biomedicine - Infer gene regulatory networks from time series data with formal methods

Ceccarelli, Michele, Cerulo, Luigi, Santone, Antonella

Year:

2013

Language:

english

File:

PDF, 660 KB

english, 2013

24

[IEEE 11th European Conference on Software Maintenance and Reengineering (CSMR'07) - Amsterdam, The Netherlands (2007.03.21-2007.03.23)] 11th European Conference on Software Maintenance and Reengineering (CSMR'07) - How Clones are Maintained: An Empirical Study

Aversano, Lerina, Cerulo, Luigi, Di Penta, Massimiliano

Year:

2007

Language:

english

File:

PDF, 360 KB

english, 2007

25

[IEEE 2009 IEEE 31st International Conference on Software Engineering - Vancouver, BC, Canada (2009.05.16-2009.05.24)] 2009 IEEE 31st International Conference on Software Engineering - Ldiff: An enhanced line differencing tool

Canfora, Gerardo, Cerulo, Luigi, Di Penta, Massimiliano

Year:

2009

Language:

english

File:

PDF, 146 KB

english, 2009

26

Irish: A Hidden Markov Model to detect coded information islands in free text

Cerulo, Luigi, Di Penta, Massimiliano, Bacchelli, Alberto, Ceccarelli, Michele, Canfora, Gerardo

Journal:

Science of Computer Programming

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

27

Achievements and challenges in software reverse engineering

Canfora, Gerardo, Di Penta, Massimiliano, Cerulo, Luigi

Journal:

Communications of the ACM

Year:

2011

Language:

english

File:

PDF, 188 KB

english, 2011

28

[ACM Press the 2006 ACM symposium - Dijon, France (2006.04.23-2006.04.27)] Proceedings of the 2006 ACM symposium on Applied computing - SAC '06 - Supporting change request assignment in open source development

Canfora, Gerardo, Cerulo, Luigi

Year:

2006

Language:

english

File:

PDF, 272 KB

english, 2006

29

[ACM Press Ninth international workshop - Dubrovnik, Croatia (2007.09.03-2007.09.04)] Ninth international workshop on Principles of software evolution in conjunction with the 6th ESEC/FSE joint meeting - IWPSE '07 - Learning from bug-introducing changes to prevent fault prone code

Aversano, Lerina, Cerulo, Luigi, Del Grosso, Concettina

Year:

2007

Language:

english

File:

PDF, 318 KB

english, 2007

30

[ACM Press Proceeding of the 8th working conference - Waikiki, Honolulu, HI, USA (2011.05.21-2011.05.22)] Proceeding of the 8th working conference on Mining software repositories - MSR '11 - Social interactions around cross-system bug fixings

Canfora, Gerardo, Cerulo, Luigi, Cimitile, Marta, Di Penta, Massimiliano

Year:

2011

Language:

english

File:

PDF, 1.13 MB

english, 2011

31

[ACM Press the the 6th joint meeting of the European software engineering conference and the ACM SIGSOFT symposium - Dubrovnik, Croatia (2007.09.03-2007.09.07)] Proceedings of the the 6th joint meeting of the European software engineering conference and the ACM SIGSOFT symposium on The foundations of software engineering - ESEC-FSE '07 - An empirical study on the evolution of design patterns

Aversano, Lerina, Canfora, Gerardo, Cerulo, Luigi, Del Grosso, Concettina, Di Penta, Massimiliano

Year:

2007

Language:

english

File:

PDF, 435 KB

english, 2007

32

[ACM Press the 32nd ACM/IEEE International Conference - Cape Town, South Africa (2010.05.01-2010.05.08)] Proceedings of the 32nd ACM/IEEE International Conference on Software Engineering - ICSE '10 - An eclectic approach for change impact analysis

Ceccarelli, Michele, Cerulo, Luigi, Canfora, Gerardo, Di Penta, Massimiliano

Year:

2010

Language:

english

File:

PDF, 170 KB

english, 2010

33

[ACM Press the 14th international conference - Ischia, Italy (2002.07.15-2002.07.19)] Proceedings of the 14th international conference on Software engineering and knowledge engineering - SEKE '02 - A visual approach to define XML to FO transformations

Canfora, Gerardo, Cerulo, Luigi

Year:

2002

Language:

english

File:

PDF, 300 KB

english, 2002

34

[ACM Press the 2006 international workshop - Shanghai, China (2006.05.22-2006.05.23)] Proceedings of the 2006 international workshop on Mining software repositories - MSR '06 - Where is bug resolution knowledge stored?

Canfora, Gerardo, Cerulo, Luigi

Year:

2006

Language:

english

File:

PDF, 240 KB

english, 2006

35

[ACM Press the 2006 international workshop - Shanghai, China (2006.05.22-2006.05.23)] Proceedings of the 2006 international workshop on Mining software repositories - MSR '06 - Fine grained indexing of software repositories to support impact analysis

Canfora, Gerardo, Cerulo, Luigi

Year:

2006

Language:

english

File:

PDF, 370 KB

english, 2006

36

[IEEE 2015 IEEE/ACM 3rd FME Workshop on Formal Methods in Software Engineering (FormaliSE) - Florence, Italy (2015.5.18-2015.5.18)] 2015 IEEE/ACM 3rd FME Workshop on Formal Methods in Software Engineering - Infer Gene Regulatory Networks from Time Series Data with Probabilistic Model Checking

Ceccarelli, Michele, Cerulo, Luigi, Ruvo, Giuseppe De, Nardone, Vittoria, Santone, Antonella

Year:

2015

Language:

english

File:

PDF, 449 KB

english, 2015

37

Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of inflammatory breast cancer

Remo, Andrea, Simeone, Ines, Pancione, Massimo, Parcesepe, Pietro, Finetti, Pascal, Cerulo, Luigi, Bensmail, Halima, Birnbaum, Daniel, Van Laere, Steven J, Colantuoni, Vittorio, Bonetti, Franco, Bertu

Journal:

Journal of Translational Medicine

Year:

2015

Language:

english

File:

PDF, 2.51 MB

english, 2015

38

[IEEE Seventh IEEE International Working Conference on Source Code Analysis and Manipulation (SCAM 2007) - Paris, France (2007.09.30-2007.10.1)] Seventh IEEE International Working Conference on Source Code Analysis and Manipulation (SCAM 2007) - Relating the Evolution of Design Patterns and Crosscutting Concerns

Aversano, Lerina, Cerulo, Luigi, Penta, Massimiliano Di

Year:

2007

Language:

english

File:

PDF, 447 KB

english, 2007

39

Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis

Hendrickx, Wouter, Simeone, Ines, Anjum, Samreen, Mokrab, Younes, Bertucci, François, Finetti, Pascal, Curigliano, Giuseppe, Seliger, Barbara, Cerulo, Luigi, Tomei, Sara, Delogu, Lucia Gemma, Maccalli

Journal:

Year:

2017

Language:

english

File:

PDF, 1.91 MB

english, 2017

40

Detection of statistically significant network changes in complex biological networks

Mall, Raghvendra, Cerulo, Luigi, Bensmail, Halima, Iavarone, Antonio, Ceccarelli, Michele

Journal:

BMC Systems Biology

Year:

2017

Language:

english

File:

PDF, 2.16 MB

english, 2017

41

Identification of long non-coding transcripts with feature selection: a comparative study

Ventola, Giovanna M. M., Noviello, Teresa M. R., D’Aniello, Salvatore, Spagnuolo, Antonietta, Ceccarelli, Michele, Cerulo, Luigi

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.51 MB

english, 2017

42

Systems biology analysis of gene expression data and gene network reverse-engineering approaches reveal NFAT5 as a candidate biomarker in Inflammatory Breast Cancer

Remo, Andrea, Simeone, Ines, Pancione, Massimo, Parcesepe, Pietro, Finetti, Pascal, Bensmail, Halima, Cerulo, Luigi, Colantuoni, Vittorio, Birnbaum, Daniel, Bonetti, Franco, Bertucci, Francois, Manfri

Journal:

Journal for ImmunoTherapy of Cancer

Year:

2015

Language:

english

File:

PDF, 257 KB

english, 2015

43

RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes

Mall, Raghvendra, Cerulo, Luigi, Garofano, Luciano, Frattini, Veronique, Kunji, Khalid, Bensmail, Halima, Sabedot, Thais S, Noushmehr, Houtan, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 10.03 MB

english, 2018

44

Ensemble of Gene Signatures Identifies Novel Biomarkers in Colorectal Cancer Activated through PPARγ and TNFα Signaling

Pagnotta, Stefano Maria, Laudanna, Carmelo, Pancione, Massimo, Sabatino, Lina, Votino, Carolina, Remo, Andrea, Cerulo, Luigi, Zoppoli, Pietro, Manfrin, Erminia, Colantuoni, Vittorio, Ceccarelli, Miche

Journal:

Year:

2013

Language:

english

File:

PDF, 2.08 MB

english, 2013

45

The Murine Model of Mucopolysaccharidosis IIIB Develops Cardiopathies over Time Leading to Heart Failure

Schiattarella, Gabriele Giacomo, Cerulo, Giuliana, De Pasquale, Valeria, Cocchiaro, Pasquale, Paciello, Orlando, Avallone, Luigi, Belfiore, Maria Paola, Iacobellis, Francesca, Di Napoli, Daniele, Magl

Journal:

Year:

2015

Language:

english

File:

PDF, 20.73 MB

english, 2015

46

Targeting Heparan Sulfate Proteoglycans as a Novel Therapeutic Strategy for Mucopolysaccharidoses

De Pasquale, Valeria, Sarogni, Patrizia, Pistorio, Valeria, Cerulo, Giuliana, Paladino, Simona, Pavone, Luigi Michele

Journal:

Molecular Therapy — Methods & Clinical Development

Year:

2018

Language:

english

File:

PDF, 1.37 MB

english, 2018

47

HGF/c-MET Axis in Tumor Microenvironment and Metastasis Formation

Spina, Anna, De Pasquale, Valeria, Cerulo, Giuliana, Cocchiaro, Pasquale, Della Morte, Rossella, Avallone, Luigi, Pavone, Luigi

Journal:

Year:

2015

Language:

english

File:

PDF, 4.17 MB

english, 2015

48

Circulating microRNAs expression profile in newly diagnosed and imatinib treated chronic phase – chronic myeloid leukemia

Ferreira, Letícia Antunes Muniz, Capannacci, Juliana, Hokama, Newton Key, Nogueira, Célia Regina, Ceccarelli, Michele, Cerulo, Luigi, D’Angelo, Fulvio, de Oliveira Montandon Hokama, Paula

Journal:

Leukemia and Lymphoma

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

49

Detection of long non–coding RNA homology, a comparative study on alignment and alignment–free metrics

Noviello, Teresa M. R., Di Liddo, Antonella, Ventola, Giovanna M., Spagnuolo, Antonietta, D’Aniello, Salvatore, Ceccarelli, Michele, Cerulo, Luigi

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.81 MB

english, 2018

50

Transcriptional regulatory networks of tumor-associated macrophages that drive malignancy in mesenchymal glioblastoma

Sa, Jason K., Chang, Nakho, Lee, Hye Won, Cho, Hee Jin, Ceccarelli, Michele, Cerulo, Luigi, Yin, Jinlong, Kim, Sung Soo, Caruso, Francesca P., Lee, Mijeong, Kim, Donggeon, Oh, Young Taek, Lee, Yeri, H

Journal:

Year:

2020

File:

PDF, 2.75 MB

2020